STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3029PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase. (391 aa)    
Predicted Functional Partners:
Cphy_3022
PFAM: Heparinase II/III family protein; KEGG: cpr:CPR_0402 hypothetical protein.
 
    0.807
Cphy_2744
KEGG: ret:RHE_PF00314 hypothetical protein.
 
     0.780
Cphy_3028
Alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase.
 
     0.768
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.695
Cphy_2534
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssv:SSU98_1240 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase).
 
   
 0.665
Cphy_0490
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
 
   
 0.663
Cphy_1164
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
 
   
 0.637
Cphy_3030
Conserved hypothetical protein; Reversibly phosphorolyzes beta-D-galactopyranosyl-(1->3)-N- acetyl-D-glucosamine to form alpha-D-galactopyranose 1-phosphate and acetyl-D-glucosamine. Active towards galacto-N-biose and lacto-N-biose. Does not phosphorolyze galacto-N-tetraose or lacto-N-tetraose. In the reverse reaction has activity toward N-acetyl-D-glucosamine and N- acetyl-D-galactosamine, but not L-rhamnose, D-glucose or D-galactose.
       0.615
Cphy_3027
PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein.
  
    0.478
Cphy_0932
PFAM: polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: bth:BT_2964 chondroitinase AC precursor.
 
   
 0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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