STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Cphy_3030Conserved hypothetical protein; Reversibly phosphorolyzes beta-D-galactopyranosyl-(1->3)-N- acetyl-D-glucosamine to form alpha-D-galactopyranose 1-phosphate and acetyl-D-glucosamine. Active towards galacto-N-biose and lacto-N-biose. Does not phosphorolyze galacto-N-tetraose or lacto-N-tetraose. In the reverse reaction has activity toward N-acetyl-D-glucosamine and N- acetyl-D-galactosamine, but not L-rhamnose, D-glucose or D-galactose. (724 aa)    
Predicted Functional Partners:
Cphy_1792
PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein.
 
     0.777
Cphy_0573
PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein.
 
     0.776
Cphy_0574
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 putative permease protein.
 
     0.762
Cphy_0575
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease protein.
 
     0.762
Cphy_3028
Alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: bvu:BVU_0535 glycoside hydrolase family 29, candidate alpha-L-fucosidase.
 
   
 0.653
Cphy_0572
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_2212 transcriptional regulator, AraC family.
 
     0.643
Cphy_0570
KEGG: cpe:CPE1200 hypothetical protein.
 
     0.640
Cphy_3029
PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.
       0.616
Cphy_3031
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0318 sugar ABC transporter permease.
       0.465
Cphy_3032
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
       0.459
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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