STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3049Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Cphy_3235
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein.
 
    0.574
Cphy_2162
PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein.
 
     0.531
Cphy_0993
KEGG: amt:Amet_3507 hypothetical protein.
  
     0.512
Cphy_1870
KEGG: dsy:DSY4364 hypothetical protein.
 
    0.470
Cphy_2576
Acetyltransferase; KEGG: rbe:RBE_0461 acetyltransferase.
 
     0.463
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.445
Cphy_1609
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cdf:CD1516 MerR-family transcriptional activator.
 
   
 0.422
Cphy_0133
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
  
 0.414
Cphy_0992
KEGG: cdf:CD1724 hypothetical protein.
  
     0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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