STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3066PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0834 probable ABC transporter. (593 aa)    
Predicted Functional Partners:
Cphy_3067
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein.
 
    
0.816
Cphy_3068
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: bay:RBAM_027430 NrsE.
 
    0.792
Cphy_3065
Hypothetical protein.
       0.566
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
 
 
 0.558
Cphy_3064
Hypothetical protein.
  
    0.512
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
  
 0.462
Cphy_2136
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component.
 
 
  
0.451
Cphy_3117
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: tde:TDE0032 histidine kinase-related ATPase, putative.
  
     0.431
Cphy_3186
KEGG: rca:Rcas_0978 hypothetical protein.
  
     0.429
Cphy_2254
PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family.
  
     0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.