STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3068Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: bay:RBAM_027430 NrsE. (357 aa)    
Predicted Functional Partners:
Cphy_3067
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein.
 
    0.797
Cphy_3066
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpe:CPE0834 probable ABC transporter.
 
    0.792
Cphy_2155
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cbe:Cbei_2111 protein tyrosine phosphatase.
 
  
 0.695
Cphy_3065
Hypothetical protein.
       0.559
Cphy_3064
Hypothetical protein.
       0.503
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.500
Cphy_2153
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dsy:DSY4672 hypothetical protein.
  
  
 0.479
Cphy_1505
KEGG: amt:Amet_4319 hypothetical protein.
 
   
 0.450
Cphy_0180
PFAM: protein of unknown function DUF1648; KEGG: bcl:ABC3712 hypothetical protein.
 
    0.414
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
  
 0.410
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.