STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Cphy_3111PFAM: sodium/hydrogen exchanger; KEGG: cdf:CD0657 putative Na(+)/H(+) antiporter. (390 aa)    
Predicted Functional Partners:
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
   
 0.659
Cphy_3110
KEGG: swo:Swol_0934 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.621
Cphy_3258
PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 homocysteine S-methyltransferase.
     
 0.557
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
     0.549
Cphy_3109
PFAM: glycoside hydrolase family 25; KEGG: cbf:CLI_0852 glycosyl hydrolase, family 25.
       0.539
Cphy_1689
PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_2648 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
 
 
 
0.531
Cphy_3620
PFAM: sodium/hydrogen exchanger; KEGG: cbh:CLC_1237 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
 
 
 
0.476
Cphy_1690
KEGG: cth:Cthe_1401 hypothetical protein.
 
    0.446
Cphy_0513
KEGG: amt:Amet_4521 hypothetical protein.
  
     0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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