STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3115PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0028 ABC transporter, ATP-binding protein, HlyB family. (606 aa)    
Predicted Functional Partners:
Cphy_3117
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: tde:TDE0032 histidine kinase-related ATPase, putative.
 
     0.847
Cphy_3116
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0817 antibiotic ABC transporter, ATP-binding protein.
 
    
0.825
Cphy_3118
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tde:TDE0033 DNA-binding response regulator.
 
     0.641
Cphy_2136
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component.
 
 
  
0.504
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.491
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
  
 0.432
Cphy_3114
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbe:Cbei_3741 HAD-superfamily hydrolase, subfamily IA, variant 1.
  
    0.422
Cphy_3883
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
   
 0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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