STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3133PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein. (155 aa)    
Predicted Functional Partners:
Cphy_3134
PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1157 acetyltransferase, GNAT family.
 
    0.762
Cphy_2415
KEGG: sma:SAV6238 hypothetical protein.
 
     0.647
Cphy_2123
SMART: transglutaminase domain protein; KEGG: ssa:SSA_0384 hypothetical protein.
  
     0.570
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.569
Cphy_0671
PFAM: Methyltransferase type 11; KEGG: rca:Rcas_1539 magnesium protoporphyrin O-methyltransferase.
 
     0.526
Cphy_3135
PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC0848 acetyltransferase.
  
    0.507
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.507
Cphy_3132
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dsy:DSY0076 hypothetical protein.
       0.506
Cphy_1943
Chitinase; PFAM: glycoside hydrolase family 19; KEGG: ath:AT1G02360 chitinase, putative.
  
     0.461
Cphy_1007
PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_1474 ABC-2 type transporter.
  
     0.453
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.