STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3135PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC0848 acetyltransferase. (166 aa)    
Predicted Functional Partners:
Cphy_3134
PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1157 acetyltransferase, GNAT family.
       0.542
Cphy_3133
PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein.
  
    0.504
Cphy_3132
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: dsy:DSY0076 hypothetical protein.
 
     0.476
Cphy_3136
PFAM: NUDIX hydrolase; KEGG: smu:SMU.561c putative hydrolase (MutT family).
  
    0.474
Cphy_3137
Hypothetical protein.
       0.441
Cphy_2904
PFAM: protein of unknown function DUF925; KEGG: cps:CPS_3132 hypothetical protein.
  
     0.406
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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