STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3144KEGG: ssv:SSU98_1061 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Cphy_3145
PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; Belongs to the 'phage' integrase family.
       0.522
Cphy_0248
KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases.
   
    0.468
Cphy_2539
Prephenate dehydrogenase; PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase.
  
    0.428
Cphy_3924
PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
  
 0.414
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.410
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.