STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3145PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; Belongs to the 'phage' integrase family. (438 aa)    
Predicted Functional Partners:
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
 
  
 0.625
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.563
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.535
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.535
Cphy_3144
KEGG: ssv:SSU98_1061 hypothetical protein.
       0.522
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.504
Cphy_0248
KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases.
   
    0.480
Cphy_0509
Membrane protein; KEGG: cac:CAC1316 predicted membrane protein.
  
     0.445
Cphy_2539
Prephenate dehydrogenase; PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; KEGG: cth:Cthe_1796 prephenate dehydrogenase.
  
    0.442
Cphy_3924
PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
  
 0.428
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.