STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
fucIL-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose. (597 aa)    
Predicted Functional Partners:
Cphy_3153
PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU; Belongs to the RbsD / FucU family.
 
  
 0.945
Cphy_3154
PFAM: carbohydrate kinase FGGY; KEGG: cpf:CPF_1049 L-fuculokinase.
 
  
 0.933
Cphy_1578
PFAM: ROK family protein; KEGG: gka:GK3204 fructokinase.
    
 0.810
Cphy_1210
Nucleotide sugar dehydrogenase; KEGG: drm:Dred_3027 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
     
  0.800
Cphy_2012
KEGG: bch:Bcen2424_5037 periplasmic binding protein/LacI transcriptional regulator.
 
     0.688
Cphy_3156
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cpf:CPF_1047 transcriptional regulator, AraC family.
 
     0.643
Cphy_1146
TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_0445 rhamnulokinase.
 
  
 0.629
Cphy_1177
PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase.
 
  
 0.612
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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