STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3161TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: ckl:CKL_2513 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Cphy_2891
PFAM: Dak phosphatase; KEGG: amt:Amet_2771 Dak phosphatase.
 
 0.935
Cphy_2892
PFAM: protein of unknown function DUF322; KEGG: oih:OB1515 hypothetical protein.
 
    0.646
Cphy_1340
KEGG: cbf:CLI_0911 hypothetical protein.
 
   0.558
Cphy_3162
KEGG: cbe:Cbei_4073 regulatory protein, LuxR.
  
    0.421
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.