Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_3163Leucyl aminopeptidase (aminopeptidase T)-like protein; KEGG: rxy:Rxyl_1168 peptidase M29, aminopeptidase II. (330 aa)    
Predicted Functional Partners:
Cphy_3162
KEGG: cbe:Cbei_4073 regulatory protein, LuxR.
 
     0.517
Cphy_0658
KEGG: pmy:Pmen_4204 hypothetical protein.
  
    0.514
Cphy_3165
KEGG: ctc:CTC00620 hypothetical protein.
       0.463
Cphy_3164
PFAM: transcriptional regulator PadR family protein; KEGG: ctc:CTC00619 regulatory protein (PadR family).
  
    0.443
Cphy_3298
TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: amt:Amet_1063 oligoendopeptidase, PepF/M3 family.
 
   
 0.418
Cphy_3699
TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: cth:Cthe_2452 oligoendopeptidase F.
 
   
 0.409
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
  
     0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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