STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3170KEGG: llm:llmg_2248 putative abortive phage resistance. (488 aa)    
Predicted Functional Partners:
Cphy_3169
KEGG: blo:BL1242 hypothetical protein.
 
     0.960
Cphy_3171
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate). Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.651
Cphy_3168
PFAM: transferase hexapeptide repeat containing protein; KEGG: cbh:CLC_2103 O-acetyltransferase family protein.
  
    0.587
Cphy_3166
PFAM: branched-chain amino acid transport; KEGG: bsu:BG11916 branched-chain amino acid transport protein.
       0.579
Cphy_3167
PFAM: AzlC family protein; KEGG: bsu:BG11915 branched-chain amino acid transport protein.
       0.579
Cphy_0444
PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_1948 hypothetical protein.
   
    0.501
Cphy_0747
TIGRFAM: C_GCAxxG_C_C family protein; PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC4050 hypothetical protein.
   
    0.501
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.