Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Cphy_3179PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0355 hypothetical protein. (250 aa)    
Predicted Functional Partners:
Cphy_3197
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A2327 methylase.
 
 
 
 0.763
Cphy_3180
KEGG: dsy:DSY1735 hypothetical protein.
 
  
 0.660
Cphy_3178
Conserved hypothetical protein.
       0.532
Cphy_3181
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein.
 
    0.511
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
     
 0.468
Cphy_0872
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_2481 methyltransferase type 11.
 
   
 0.436
Cphy_3182
PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1232 hypothetical protein.
       0.426
Cphy_3183
KEGG: dsy:DSY1232 hypothetical protein.
       0.426
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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