Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_3180KEGG: dsy:DSY1735 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Cphy_3179
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0355 hypothetical protein.
 
  
 0.660
Cphy_3181
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein.
       0.549
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.548
Cphy_3182
PFAM: Domain of unknown function DUF1905; KEGG: dsy:DSY1232 hypothetical protein.
       0.536
Cphy_3183
KEGG: dsy:DSY1232 hypothetical protein.
       0.536
Cphy_1098
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family.
 
  
 0.525
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
  
     0.513
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.467
Cphy_1284
KEGG: gtn:GTNG_1989 hypothetical protein.
  
     0.449
Cphy_3178
Conserved hypothetical protein.
       0.434
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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