STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3189Hypothetical protein. (58 aa)    
Predicted Functional Partners:
Cphy_3188
Hypothetical protein.
       0.773
Cphy_3190
Hypothetical protein.
       0.773
Cphy_3191
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: btk:BT9727_3018 conserved hypothetical protein, possible microcin C7 self-immunity protein.
       0.773
Cphy_3192
PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS1543 conserved hypothetical protein-acetyltransferase, including N-acetylase of ribosomal proteins.
       0.476
Cphy_3193
KEGG: blo:BL0186 possible esterase.
       0.454
Cphy_3187
KEGG: cth:Cthe_0378 hypothetical protein.
       0.417
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.