STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3204PFAM: GCN5-related N-acetyltransferase; KEGG: lca:LSEI_2784 predicted acetyltransferase. (260 aa)    
Predicted Functional Partners:
Cphy_3205
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tte:TTE1617 glycerol 3-phosphate dehydrogenase.
       0.578
Cphy_2189
PFAM: glutaredoxin 2; KEGG: mhu:Mhun_3231 cytochrome c biogenesis protein, transmembrane region.
 
     0.488
Cphy_2186
PFAM: transglutaminase domain protein; KEGG: pdi:BDI_3332 hypothetical protein.
  
     0.486
Cphy_1918
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH0482 lipoprotein.
  
     0.479
Cphy_3822
HflK protein; HflC and HflK could encode or regulate a protease.
 
    0.479
Cphy_1657
KEGG: bth:BT_2376 hypothetical protein.
  
     0.471
Cphy_3821
Band 7 protein; HflC and HflK could regulate a protease.
 
    0.455
Cphy_1010
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein.
  
     0.446
Cphy_1632
KEGG: ctc:CTC02460 ATP-dependent DNA helicase rep.
  
     0.441
Cphy_1549
Hypothetical protein; KEGG: efa:EF1234 ABC transporter, substrate-binding protein, putative.
  
     0.437
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.