STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3207PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y. (381 aa)    
Predicted Functional Partners:
Cphy_3210
KEGG: bha:BH2111 putative multiple sugar transport system substrate-binding protein.
 
     0.825
Cphy_3208
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease).
 
     0.743
Cphy_0531
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.731
Cphy_2108
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0863 endo-1,4-beta-xylanase.
 
   
 0.688
Cphy_3618
PFAM: glycoside hydrolase family 43; KEGG: bad:BAD_0301 pyridine nucleotide-disulphide oxidoreductase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.664
Cphy_3211
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein.
 
     0.662
Cphy_2652
PFAM: AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type.
  
     0.642
Cphy_3158
Alpha-glucuronidase; PFAM: glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; KEGG: bha:BH1061 alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.624
Cphy_2128
Mannan endo-1,4-beta-mannosidase, Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 26; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: cth:Cthe_0032 glycoside hydrolase, family 26; Belongs to the glycosyl hydrolase 26 family.
 
   
 0.613
Cphy_3011
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: oih:OB2087 arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.592
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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