STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3208PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease). (301 aa)    
Predicted Functional Partners:
Cphy_3209
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2112 transmembrane lipoprotein.
 
   0.912
Cphy_3210
KEGG: bha:BH2111 putative multiple sugar transport system substrate-binding protein.
 
 
 0.866
Cphy_1547
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1357 binding-protein-dependent transport systems inner membrane component.
  
   0.807
Cphy_0860
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component.
  
   0.806
Cphy_0929
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 putative membrane protein; RBL03398.
  
   0.804
Cphy_0339
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01385 transmembrane lipoprotein; RBL02385.
  
   0.803
Cphy_1916
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 putative membrane protein; RBL03398.
  
   0.803
Cphy_2732
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2531 binding-protein-dependent transport systems inner membrane component.
  
   0.803
Cphy_0664
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
  
   0.800
Cphy_0695
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2725 binding-protein-dependent transport systems inner membrane component.
  
   0.800
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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