STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Cphy_3210KEGG: bha:BH2111 putative multiple sugar transport system substrate-binding protein. (569 aa)    
Predicted Functional Partners:
Cphy_3208
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2113 ABC transporter (permease).
 
   0.870
Cphy_3211
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein.
 
     0.855
Cphy_3207
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
 
     0.825
Cphy_3209
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2112 transmembrane lipoprotein.
 
  
 0.805
Cphy_2652
PFAM: AraC protein arabinose-binding/dimerisation; KEGG: cbe:Cbei_4840 helix-turn-helix-domain containing protein, AraC type.
  
     0.749
Cphy_1549
Hypothetical protein; KEGG: efa:EF1234 ABC transporter, substrate-binding protein, putative.
  
     0.739
Cphy_1548
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2553 binding-protein-dependent transport systems inner membrane component.
  
   0.710
Cphy_3212
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH2110 hypothetical protein.
 
     0.710
Cphy_0531
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_1271 carbohydrate binding family 6; Belongs to the glycosyl hydrolase 43 family.
  
    0.692
Cphy_2263
Hypothetical protein; KEGG: cbh:CLC_2573 lipase/acylhydrolase, GDSL family.
  
     0.690
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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