STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3230Hypothetical protein; KEGG: ctc:CTC00494 internalin A-like protein/putative S-layer protein. (718 aa)    
Predicted Functional Partners:
Cphy_3229
KEGG: cpe:CPE0748 hypothetical protein.
       0.752
Cphy_3231
PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family.
       0.605
Cphy_3228
PFAM: Abortive infection protein; KEGG: tde:TDE1871 hypothetical protein.
       0.530
Cphy_3698
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig domain protein group 2 domain protein; KEGG: cpv:cgd6_4840 serine protease, subtilase family, signal peptide.
 
   0.490
Cphy_3227
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbf:CLI_0887 glyoxalase family protein.
 
     0.454
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
      
 0.428
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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