STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3231PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_1455 acetyltransferase, GNAT family. (139 aa)    
Predicted Functional Partners:
Cphy_3229
KEGG: cpe:CPE0748 hypothetical protein.
 
     0.664
Cphy_3230
Hypothetical protein; KEGG: ctc:CTC00494 internalin A-like protein/putative S-layer protein.
       0.605
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
     0.513
Cphy_0780
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.465
Cphy_3232
KEGG: amt:Amet_3811 hypothetical protein.
       0.463
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
  
     0.446
Cphy_2569
PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE1030 putative multiple sugar/glycerol-3P transport system substrate-binding protein.
  
     0.430
Cphy_3228
PFAM: Abortive infection protein; KEGG: tde:TDE1871 hypothetical protein.
       0.426
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.