STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3233PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2822 zwittermicin A-resistance protein. (267 aa)    
Predicted Functional Partners:
Cphy_0690
PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein.
   
    0.549
Cphy_2133
PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein.
   
    0.549
Cphy_3220
Hypothetical protein; KEGG: cdf:CD1883 AraC-family transcriptional regulator.
  
    0.473
Cphy_3234
PFAM: Creatininase; KEGG: syn:sll0596 hypothetical protein.
       0.464
Cphy_3579
Hypothetical protein; KEGG: abu:Abu_1032 peptidase, M50 family.
   
    0.410
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.408
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.