STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3235PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: btk:BT9727_2277 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Cphy_2411
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3364 hypothetical protein.
 
  
 0.810
Cphy_2162
PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12825 hypothetical protein.
  
     0.679
Cphy_2165
KEGG: cbe:Cbei_3228 hypothetical protein.
  
     0.669
Cphy_3236
KEGG: hne:HNE_2897 hypothetical protein.
       0.618
Cphy_2164
Hypothetical protein.
  
     0.602
Cphy_2553
KEGG: mac:MA2899 hypothetical protein.
  
     0.601
Cphy_3221
PFAM: Domain of unknown function DUF1801; KEGG: lbl:LBL_1943 hypothetical protein.
 
     0.601
Cphy_3049
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: dsy:DSY0175 hypothetical protein.
 
    0.574
Cphy_2575
PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1438 hypothetical protein.
 
     0.500
Cphy_0023
KEGG: rci:RCIX1087 hypothetical protein.
  
     0.492
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.