STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3240PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1. (522 aa)    
Predicted Functional Partners:
Cphy_3242
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
    0.893
Cphy_3241
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease.
 
   0.810
Cphy_0665
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0362 polysaccharide ABC transporter permease.
  
   0.777
Cphy_0394
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3118 sugar ABC transporter permease.
  
   0.770
Cphy_0393
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.766
Cphy_2192
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.765
Cphy_0860
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2554 binding-protein-dependent transport systems inner membrane component.
 
    0.761
Cphy_0664
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.758
Cphy_2656
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.757
Cphy_1119
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.756
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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