STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3245KEGG: tte:TTE2592 hypothetical protein. (228 aa)    
Predicted Functional Partners:
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
     
 0.651
Cphy_3246
PFAM: ROK family protein; KEGG: tte:TTE1926 transcriptional regulator.
  
  
 0.641
Cphy_3244
KEGG: tte:TTE2593 hypothetical protein.
       0.629
Cphy_3243
KEGG: tte:TTE2589 hypothetical protein.
       0.615
Cphy_3241
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease.
       0.602
Cphy_3242
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
       0.601
Cphy_3240
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1.
       0.462
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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