STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3262PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Cphy_2843
PFAM: response regulator receiver; CheW domain protein; KEGG: amt:Amet_2732 putative CheW protein.
  
 
 0.850
Cphy_1695
PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase.
  
     0.681
Cphy_2810
PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amt:Amet_3406 glycosyl transferase, family 2.
  
     0.681
Cphy_0323
PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase.
  
     0.563
Cphy_0718
KEGG: pin:Ping_0445 membrane protein involved in colicin uptake-like protein.
  
     0.544
Cphy_2690
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases.
  
 
 0.508
Cphy_0258
PFAM: CheW domain protein; KEGG: maq:Maqu_1966 putative CheW protein.
  
 
 0.450
Cphy_2689
PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein.
  
 
 0.450
Cphy_2838
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein.
  
 
 0.410
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.