STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3264PFAM: Ig domain protein group 2 domain protein; KEGG: cac:CAC3086 protein containing cell adhesion domain. (262 aa)    
Predicted Functional Partners:
Cphy_2164
Hypothetical protein.
  
   
 0.574
Cphy_3265
Hypothetical protein.
       0.572
Cphy_3263
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pdi:BDI_3848 putative phosphatase, HAD family.
       0.522
Cphy_1889
PFAM: Ig domain protein group 2 domain protein; KEGG: chu:CHU_1335 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein.
  
     0.484
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.447
Cphy_1513
PFAM: regulatory protein TetR; KEGG: cac:CAC1668 transcriptional regulator, AcrR family.
  
     0.429
Cphy_2588
KEGG: cac:CAC3086 protein containing cell adhesion domain.
 
     0.409
Cphy_2553
KEGG: mac:MA2899 hypothetical protein.
  
     0.400
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.