STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3278Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: cno:NT01CX_0163 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (334 aa)    
Predicted Functional Partners:
Cphy_3279
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
 0.992
Cphy_3277
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins.
 0.988
Cphy_3280
ABC-type sugar transport system ATPase component-like protein; KEGG: cpr:CPR_1601 ribose transport ATP-binding protein RbsA.
 0.984
Cphy_1134
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
 0.975
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.974
Cphy_1132
KEGG: rle:RL0518 putative solute-binding component of ABC transporter.
 0.973
Cphy_2009
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
 0.967
Cphy_2251
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein.
 0.965
Cphy_2012
KEGG: bch:Bcen2424_5037 periplasmic binding protein/LacI transcriptional regulator.
 0.930
Cphy_2011
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_1087 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.918
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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