STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3282Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0124 response regulator receiver protein. (535 aa)    
Predicted Functional Partners:
Cphy_3281
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: csc:Csac_2533 integral membrane sensor signal transduction histidine kinase.
 
 
  0.969
Cphy_2140
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cth:Cthe_1585 signal transduction histidine kinase, LytS.
 
 
  0.879
Cphy_3280
ABC-type sugar transport system ATPase component-like protein; KEGG: cpr:CPR_1601 ribose transport ATP-binding protein RbsA.
 
    0.877
Cphy_3886
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM.
 
 
  0.868
Cphy_3406
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2517 integral membrane sensor signal transduction histidine kinase.
 
 
  0.854
Cphy_0863
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_2551 integral membrane sensor signal transduction histidine kinase.
 
 
  0.835
Cphy_1721
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cpr:CPR_2057 sensor histidine kinase.
 
 
  0.818
Cphy_2008
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4430 multi-sensor signal transduction histidine kinase.
 
 
  0.818
Cphy_3857
Signal transduction histidine kinase, LytS; PFAM: histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_0683 histidine kinase internal region.
 
 
 0.804
Cphy_1582
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase.
 
 
 0.801
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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