STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3292KEGG: cth:Cthe_2069 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Cphy_3896
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
  
     0.657
Cphy_3293
KEGG: cno:NT01CX_1368 hypothetical protein.
 
     0.627
Cphy_0023
KEGG: rci:RCIX1087 hypothetical protein.
  
     0.626
Cphy_3734
KEGG: tte:TTE0157 hypothetical protein.
  
     0.562
Cphy_0697
PFAM: extracellular solute-binding protein family 1; KEGG: lmf:LMOf2365_2031 ABC transporter, substrate-binding protein.
  
     0.558
Cphy_0136
Hypothetical protein; KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ.
  
     0.545
Cphy_3888
Chromosome segregation ATPase-like protein; KEGG: cpr:CPR_0357 hypothetical protein.
  
     0.532
Cphy_3811
PFAM: protein of unknown function DUF58; KEGG: csc:Csac_0672 protein of unknown function DUF58.
  
     0.528
Cphy_2733
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3316 extracellular solute-binding protein, family 1.
  
     0.488
Cphy_3294
KEGG: cno:NT01CX_0275 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic.
       0.479
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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