Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3297KEGG: bat:BAS4429 hypothetical protein. (338 aa)    
Predicted Functional Partners:
Cphy_3296
KEGG: cth:Cthe_1219 hypothetical protein.
       0.682
Cphy_1271
KEGG: tde:TDE1860 hypothetical protein.
 
   
 0.650
Cphy_3858
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1.
  
     0.598
Cphy_3672
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein.
  
  
 0.559
Cphy_1848
KEGG: cbf:CLI_2295 transcriptional regulator, MerR family.
  
     0.496
Cphy_3298
TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: amt:Amet_1063 oligoendopeptidase, PepF/M3 family.
       0.405
Cphy_3229
KEGG: cpe:CPE0748 hypothetical protein.
  
     0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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