STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3317PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 putative sugar-binding lipoprotein precursor. (492 aa)    
Predicted Functional Partners:
Cphy_3316
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1726 ABC transporter permease protein.
 
   0.853
Cphy_3315
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7011 putative membrane transport protein.
 
   0.811
Cphy_3309
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV1723 mycodextranase.
  
     0.767
Cphy_3310
Hypothetical protein; KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; Belongs to the glycosyl hydrolase 28 family.
  
     0.741
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
  
     0.642
Cphy_3314
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cac:CAC2685 trehalose/maltose hydrolase (phosphorylase).
 
     0.552
Cphy_2420
KEGG: cpf:CPF_0333 hypothetical protein.
  
     0.533
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.520
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.520
Cphy_1642
KEGG: ani:AN4890.2 hypothetical protein.
  
     0.518
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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