STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3331PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214. (662 aa)    
Predicted Functional Partners:
Cphy_3332
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0507 ABC transporter related.
 
 0.996
Cphy_3333
PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0508 integral membrane sensor signal transduction histidine kinase.
 
  
 0.992
Cphy_3334
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csc:Csac_0509 two component transcriptional regulator, winged helix family.
 
   
 0.888
Cphy_1857
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter.
 
 
 0.636
Cphy_0134
PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein.
   
    0.604
Cphy_0192
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.573
Cphy_1092
KEGG: dsy:DSY1080 hypothetical protein.
  
 
 0.526
Cphy_2363
Hypothetical protein; KEGG: tte:TTE1601 membrane-fusion protein.
  
 
 0.526
Cphy_3579
Hypothetical protein; KEGG: abu:Abu_1032 peptidase, M50 family.
  
 
 0.526
Cphy_1243
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein.
  
 
 0.462
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.