STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3336Alpha-tubulin suppressor and related RCC1 domain-containing protein; KEGG: aeh:Mlg_2687 regulator of chromosome condensation, RCC1. (787 aa)    
Predicted Functional Partners:
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
    
 0.858
Cphy_3337
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cbe:Cbei_1736 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.773
Cphy_3410
KEGG: oih:OB1036 hypothetical protein.
   
 
 0.733
Cphy_2581
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cpf:CPF_1731 sulfate permease, SulP family.
    
   0.698
Cphy_3578
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bay:RBAM_037310 hypothetical protein.
    
 0.622
Cphy_2761
PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein.
    
   0.614
Cphy_3338
PFAM: Phosphoglycerate mutase; KEGG: cme:CMA037C hypothetical protein Pfam: PGAM.
 
     0.490
Cphy_1255
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.473
Cphy_2857
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.473
Cphy_0249
KEGG: cth:Cthe_2247 regulatory protein, MerR.
    
  0.471
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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