STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3365PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58. (389 aa)    
Predicted Functional Partners:
Cphy_3364
PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein.
 
  
 0.877
Cphy_3366
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases.
 
  
 0.838
Cphy_3707
PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein.
 
  
 0.651
Cphy_3367
Cellulase; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
 
     0.597
Cphy_3708
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
  
     0.550
Cphy_3368
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
 
     0.502
Cphy_1163
Cellulase; PFAM: glycoside hydrolase family 5; KEGG: cth:Cthe_2872 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.500
Cphy_1696
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: amt:Amet_1479 transcriptional regulator, TrmB.
  
     0.491
Cphy_2120
KEGG: cth:Cthe_1850 hypothetical protein.
  
     0.449
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
  
     0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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