STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
Experiments
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[Homology]
Score
Cphy_3366PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases. (316 aa)    
Predicted Functional Partners:
Cphy_3364
PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein.
 
  
 0.865
Cphy_3365
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
 
  
 0.831
Cphy_3707
PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein.
 
  
 0.787
Cphy_3367
Cellulase; PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
  
  
 0.555
Cphy_3369
PFAM: heat shock protein Hsp90; KEGG: cth:Cthe_0550 heat shock protein HSP90.
     
 0.532
Cphy_3368
PFAM: glycoside hydrolase family 48; type 3a cellulose-binding domain protein; protein of unknown function DUF291; KEGG: csc:Csac_1076 glycoside hydrolase, family 48.
  
  
 0.518
Cphy_3708
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
 
  
 0.442
Cphy_0409
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: cbf:CLI_0318 malic enzyme.
  
    0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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