STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3387PFAM: phosphoesterase PA-phosphatase related; KEGG: cbf:CLI_0422 PAP2 family protein. (168 aa)    
Predicted Functional Partners:
Cphy_3516
KEGG: csc:Csac_0698 hypothetical protein.
   
 0.737
Cphy_2911
PFAM: cytochrome P450; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog.
   
 0.625
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.593
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
  
 0.581
Cphy_3074
PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cth:Cthe_2265 H+-transporting two-sector ATPase, C (AC39) subunit.
    
 
 0.503
Cphy_3447
PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: ctc:CTC02332 V-type sodium ATP synthase subunit C.
    
 
 0.503
Cphy_3771
KEGG: pin:Ping_1307 predicted antifreeze protein type I.
   
 0.463
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
    
 0.446
Cphy_0678
PFAM: phosphoesterase PA-phosphatase related; KEGG: sep:SE1109 hypothetical protein.
 
   
 0.427
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.