STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3402PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0385 lactose ABC transporter substrate-binding protein. (451 aa)    
Predicted Functional Partners:
Cphy_3400
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1119 putative multiple sugar transport system permease protein.
 
   0.861
Cphy_3401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease.
 
   0.861
Cphy_3027
PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein.
  
     0.737
Cphy_2848
PFAM: glycoside hydrolase family 4; KEGG: csc:Csac_2748 glycoside hydrolase, family 4.
  
    0.689
Cphy_3396
Glycoside hydrolase family 4; Alpha-galacturonidase able to catalyze the hydrolysis of the chromogenic substrate p-nitrophenyl-alpha-D-galacturonic acid (pNPalphaGalUA). It is probable that alpha-1,4-di-galacturonate (GalUA(2)) is the naturally occurring substrate.
  
    0.687
Cphy_0341
PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi01384 lipoprotein; RBL02387.
  
     0.679
Cphy_0494
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein.
  
     0.671
Cphy_0769
PFAM: glycoside hydrolase family 4; KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4.
  
    0.665
Cphy_0343
PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein.
  
    0.644
Cphy_0931
PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi03168 similar to lipoprotein; RBL03402.
  
     0.640
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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