STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3408PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component. (293 aa)    
Predicted Functional Partners:
Cphy_3407
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2347 sugar permeases.
  0.992
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 0.971
Cphy_3860
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.
 
  0.968
Cphy_1531
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2542 binding-protein-dependent transport systems inner membrane component.
  0.967
Cphy_3409
PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE2345 sugar-binding periplasmic proteins/domains.
 
  0.962
Cphy_3401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease.
  
  
 
0.917
Cphy_1076
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgt:cgR_2364 hypothetical protein.
 
  0.907
Cphy_3858
PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein, family 1.
 
  0.885
Cphy_1529
PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1.
 
  0.878
Cphy_2306
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_3631 maltosaccharide ABC transporter, permease.
 
 0.873
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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