STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3411KEGG: mma:MM_2848 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Cphy_3412
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: amt:Amet_0679 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.681
Cphy_1590
Transcriptional regulator, XRE family; KEGG: bcy:Bcer98_0514 helix-turn-helix domain protein.
  
     0.608
Cphy_1591
PFAM: major facilitator superfamily MFS_1; KEGG: tme:Tmel_0369 major facilitator superfamily MFS_1.
  
     0.537
Cphy_2300
PFAM: phosphocarrier HPr protein; KEGG: csc:Csac_1846 hypothetical protein.
  
     0.444
Cphy_3465
Hypothetical protein; KEGG: sth:STH2197 putative S-layer associated protein.
  
     0.419
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.