STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3464PFAM: regulatory protein GntR HTH; KEGG: swo:Swol_1390 transcriptional regulator, GntR family. (126 aa)    
Predicted Functional Partners:
Cphy_3463
PFAM: UvrB/UvrC protein; KEGG: csc:Csac_2369 UvrB/UvrC protein.
       0.786
Cphy_3462
PFAM: ATP:guanido phosphotransferase; KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase.
       0.757
Cphy_3461
PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2; Belongs to the ClpA/ClpB family.
       0.748
Cphy_2235
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family.
  
     0.687
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
  
     0.539
Cphy_3460
Hypothetical protein.
       0.454
Cphy_0185
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: lre:Lreu_1332 regulatory protein GntR, HTH.
  
     0.447
Cphy_3465
Hypothetical protein; KEGG: sth:STH2197 putative S-layer associated protein.
  
    0.436
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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