STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3470PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family. (864 aa)    
Predicted Functional Partners:
Cphy_0205
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.918
Cphy_1098
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cpf:CPF_0767 iron-sulfur cluster-binding protein, rieske family.
  
 
 0.912
Cphy_0181
PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: gtn:GTNG_2699 cysteine desulfhydrase.
   
 
 0.879
Cphy_2179
Cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bpl:BURPS1106A_A2865 cysteine desulfurase.
   
 
 0.879
Cphy_2302
PFAM: aminotransferase class V; KEGG: tte:TTE1663 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
   
 
 0.879
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 
 0.879
Cphy_2180
Transcriptional regulator, ArsR family; PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: mba:Mbar_A3427 putative ArsR family transcriptional regulator.
  
  
 0.864
Cphy_1868
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: cbf:CLI_0245 pyridine nucleotide-disulphide oxidoreductase family protein.
  
  
 0.860
Cphy_0164
PFAM: beta-lactamase domain protein; KEGG: cdf:CD1802 putative hydrolase.
  
 0.856
Cphy_0549
PFAM: beta-lactamase domain protein; KEGG: chy:CHY_2221 metallo-beta-lactamase family protein.
  
 0.856
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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