STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3500KEGG: ana:all4429 similar to hemolytic protein HlpA. (339 aa)    
Predicted Functional Partners:
Cphy_1201
KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.741
Cphy_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
  
  
 0.741
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
    
   0.740
Cphy_3498
PFAM: O-antigen polymerase; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
  
  
 0.731
Cphy_3542
KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.727
Cphy_3504
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD.
  
  
 0.696
Cphy_3507
PFAM: sugar transferase; KEGG: amt:Amet_0201 sugar transferase.
  
  
 0.667
Cphy_3501
PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein.
 
  
 0.656
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
 
  
 0.632
Cphy_3505
PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4.
 
  
 0.616
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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