STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3501PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Cphy_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
 
  
 0.966
Cphy_3502
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L-FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase.
 
  
 0.899
Cphy_3504
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD.
 
  
 0.874
Cphy_3506
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bha:BH3715 UDP-glucose 4-epimerase (galactowaldenases).
 
  
 0.757
Cphy_3507
PFAM: sugar transferase; KEGG: amt:Amet_0201 sugar transferase.
  
  
 0.745
Cphy_3505
PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4.
       0.727
Cphy_3500
KEGG: ana:all4429 similar to hemolytic protein HlpA.
 
  
 0.655
Cphy_3499
PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT_0390 putative O-antigen export protein.
  
  
 0.636
Cphy_1306
KEGG: cbf:CLI_0627 hypothetical protein.
   
 
 0.615
Cphy_3498
PFAM: O-antigen polymerase; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
  
  
 0.590
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.