STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3504Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD. (340 aa)    
Predicted Functional Partners:
Cphy_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
 
 
 0.997
Cphy_3502
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: fps:FP1285 FnlC protein involved in UDP-L-FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase.
 
  
 0.970
Cphy_3505
PFAM: glycosyl transferase group 1; KEGG: pdi:BDI_0575 glycosyltransferase family 4.
 
  
 0.938
Cphy_2214
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase.
  
 
 0.934
Cphy_3507
PFAM: sugar transferase; KEGG: amt:Amet_0201 sugar transferase.
 
  
 0.878
Cphy_3501
PFAM: glycosyl transferase group 1; KEGG: eba:ebA5884 hypothetical protein.
 
  
 0.871
Cphy_3506
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: bha:BH3715 UDP-glucose 4-epimerase (galactowaldenases).
 
  
 0.813
Cphy_1213
Capsular exopolysaccharide family; KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.730
Cphy_3500
KEGG: ana:all4429 similar to hemolytic protein HlpA.
  
  
 0.696
Cphy_3499
PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT_0390 putative O-antigen export protein.
  
  
 0.630
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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