STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3532PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_0073 ABC-type branched-chain amino acid transport systems, ATPase component. (236 aa)    
Predicted Functional Partners:
Cphy_3534
PFAM: inner-membrane translocator; KEGG: drm:Dred_2238 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Cphy_1259
PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Cphy_3535
PFAM: inner-membrane translocator; KEGG: dsy:DSY5025 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.996
Cphy_3533
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0446 ATP binding protein of ABC transporter for branched-chain amino acids.
 
 
0.992
Cphy_3536
PFAM: Extracellular ligand-binding receptor; KEGG: fnu:FN1432 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
 
 
 0.992
Cphy_1257
PFAM: Extracellular ligand-binding receptor; KEGG: amt:Amet_4119 extracellular ligand-binding receptor.
 
 
 0.987
Cphy_1258
PFAM: inner-membrane translocator; KEGG: amt:Amet_4118 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.986
Cphy_1260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related.
 
 
0.969
Cphy_1261
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4115 ABC transporter related.
  
  
 
0.903
Cphy_3531
KEGG: cbe:Cbei_4066 hypothetical protein.
       0.782
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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