STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3542KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase. (473 aa)    
Predicted Functional Partners:
Cphy_1213
Capsular exopolysaccharide family; KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.994
Cphy_2814
PFAM: glycosyl transferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cbe:Cbei_2586 glycosyl transferase, family 2.
 
  
 0.896
Cphy_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
  
  
 0.895
Cphy_3498
PFAM: O-antigen polymerase; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
  
  
 0.862
Cphy_1209
PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll3709 polysaccharide transporter, PST family.
 
  
 0.828
Cphy_3679
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.815
Cphy_2194
KEGG: amt:Amet_1816 hypothetical protein.
  
  
 0.813
Cphy_3499
PFAM: polysaccharide biosynthesis protein; KEGG: bth:BT_0390 putative O-antigen export protein.
  
  
 0.804
Cphy_1201
KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
0.790
Cphy_3017
Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.786
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.